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Description |
This module incorporates functionality for reading and writing
sequence data in the Fasta format.
Each sequence consists of a header (with a > prefix)
and a set of lines containing the sequence data.
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Synopsis |
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Reading and writing plain FASTA files
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Lazily read sequences from a FASTA-formatted file
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Write sequences to a FASTA-formatted file.
Line length is 60.
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Lazily read sequence from handle
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Write sequences in FASTA format to a handle.
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Reading and writing quality files
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Read quality data for sequences to a file.
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Write quality data for sequences to a file.
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Combining FASTA and quality files
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Read sequence and associated quality. Will error if
the sequences and qualites do not match one-to-one in sequence.
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Write sequence and quality data simulatnously
This may be more laziness-friendly.
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Counting sequences in a FASTA file
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Helper function for reading your own sequences
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Convert a list of FASTA-formatted lines into a list of sequences.
Blank lines are ignored.
Comment lines start with are allowed between sequences (and ignored).
Lines starting with > initiate a new sequence.
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Produced by Haddock version 2.4.2 |