Changelog for mcmc-0.3.0
Markov chain Monte Carlo sampling - ChangeLog
Unreleased changes
0.3.0
- New shorter example/test for dating trees.
noData
allows running a chain without likelihood function.- Give proposal parameters
PName
,PDescription
, andPWeight
newtype wrappers. - Give
Tune
a data type. - Allow periodical cleansing of state (
Cleaner
). - Add description string to proposals, so that they can be identified in an easier way.
- Add simplices and proposals on simplices.
slideUniform
renamed toslideUniformSymmetric
.- Merge tools into internal.
- Do not export internal modules.
0.2.4
- Change order of arguments for proposals.
- 'slideStem' was renamed to 'slideBranch'.
- Change ProposalSimple from newtype to type.
- Contravariant instances of parameter and batch monitors. Use
(>$<)
instead of(@.)
and(@#)
. - Add
gammaDirichlet
prior for partitioned dating analyses.
0.2.3
- Contrary proposals.
- Change how monitors are lifted (use normal function, not a lens).
- Priors.
- Remove concurrent monitors (was slow).
- Improve MCMC sampler output.
0.2.2
- Move away from hpack.
0.2.1
- Consistently use ByteString instead of Text.
- Verbosity levels.
- Improved handling of proposals, moves, and monitors.
- Bactrian moves.
- Many small changes.
0.1.3
Many changes; notably it is now possible to continue a Markov chain run.