-*-change-log-*- 1.0.3 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 19. April 2015 * Added Y (pyrimidine) and R (purine) to sequence characters 1.0.2 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 19. March 2015 * Linebreaks are now filtered from structural alignment sequence identifiers 1.0.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 27. October 2014 * Fixed compiler warnings and updated documentation to mention structural clustal format * Added -Wall and -O2 compiler options * Added support for clustal alignments with secondary structure annotation