Name:                damage-patterns
Version:             0.27
Synopsis:            analyses substitution patterns in aligned DNA reads
Homepage:            http://bioinf.eva.mpg.de/damage-patterns
License:             GPL-2
License-file:        LICENSE
Author:              Udo Stenzel
Maintainer:          udo_stenzel@eva.mpg.de
Category:            Graphics
Build-type:          Custom
Description:
 This diagramming tool was used in number of ancient DNA analyses.  It
 has now being separated and somewhat cleaned up, since apparently it
 will not be thrown away soon.

Data-Files:          damage-patterns.1
Cabal-version:       >=1.6
-- Tested-With:         GHC == 7.10.2

source-repository head
  type:     git
  location: https://bitbucket.org/ustenzel/damage-patterns.git

Flag Chart
  Description: Enable graphing, not just stats.
  Default:     True

Executable damage-patterns
  Build-depends:       array            >= 0.4 && < 0.6,
                       base             >= 4.2 && < 4.10,
                       biohazard        >= 0.6.6 && < 0.7,
                       bytestring       >= 0.9 && < 0.11, 
                       containers       >= 0.4 && < 0.6,
                       directory        >= 1.2 && < 2.0,
                       filepath         >= 1.3 && < 1.5,
                       iteratee         >= 0.8.9.6 && < 0.8.10,
                       transformers     >= 0.3 && < 0.6,
                       vector           >= 0.9 && < 0.11,
                       vector-th-unbox

  Ghc-Options:         -Wall -auto-all
  Main-is:             damage-patterns.hs
  Extensions:          CPP
  Other-Modules:       StatUtil

  if flag(Chart)
    Cpp-Options:         -DCHART
    Other-Modules:       Diagrams_Rasterific GraphUtil

    Build-depends:       Chart                  >= 1.3 && < 2.0,
                         Chart-diagrams         >= 1.4 && < 2.0,
                         diagrams-core          >= 1.2 && < 2.0,
                         diagrams-lib           >= 1.2 && < 2.0,
                         diagrams-rasterific    >= 1.3 && < 2.0,
                         diagrams-svg           >= 1.3 && < 2.0,
                         JuicyPixels            >= 3.1.5 && < 3.3,
                         transformers-compat    == 0.4.*,
                         Rasterific             >= 0.6.1 && < 0.7