| Copyright | (c) Dominik Schrempf 2021 |
|---|---|
| License | GPL-3.0-or-later |
| Maintainer | dominik.schrempf@gmail.com |
| Stability | unstable |
| Portability | portable |
| Safe Haskell | None |
| Language | Haskell2010 |
ELynx.Data.MarkovProcess.Nucleotide
Description
Creation date: Thu Jan 24 08:33:26 2019.
XXX: Maybe rename to something like DNA substitution models. Nucleotide ~ Alphabet; DNA ~ Character.
The order of nucleotides is A, C, G, T; see Nucleotide.
For the different DNA substitution models, please see https://en.wikipedia.org/wiki/Models_of_DNA_evolution
Synopsis
Documentation
jc :: SubstitutionModel Source #
JC substitution model.
f81 :: StationaryDistribution -> SubstitutionModel Source #
F81 substitution model.
hky :: Double -> StationaryDistribution -> SubstitutionModel Source #
HKY substitution model.
gtr4 :: [Double] -> StationaryDistribution -> SubstitutionModel Source #
HKY substitution model.