module Numeric.LinearAlgebra.SVD.SVDLIBC
(svd, sparsify, sparseSvd) where
import Control.Applicative
import qualified Numeric.LinearAlgebra.Data as P
import qualified Numeric.LinearAlgebra.Devel as I
import qualified Data.Vector.Storable as Vec
import Foreign hiding (unsafePerformIO)
import Foreign.C.Types
import System.IO.Unsafe
import Foreign.Marshal.Alloc
import System.IO
newtype DenseMatrix = DMat (ForeignPtr DenseMatrix)
deriving (Eq, Ord, Show)
foreign import ccall unsafe "svdNewDMatFromArray" _newDMatFromArray :: CInt -> CInt -> Ptr Double -> IO (Ptr DenseMatrix)
foreign import ccall unsafe "&free_dmat" p_freeDMat :: FunPtr (Ptr DenseMatrix -> IO ())
newtype SparseMatrix = SMat (ForeignPtr SparseMatrix)
deriving (Eq, Ord, Show)
foreign import ccall unsafe "svdNewSMat" _newSMat :: CInt -> CInt -> IO (Ptr SparseMatrix)
foreign import ccall unsafe "svd_new_smat_from_csr" _newSMatFromCSRT :: CInt -> CInt -> CInt -> Ptr CLong -> Ptr CLong -> Ptr Double -> IO (Ptr SparseMatrix)
foreign import ccall unsafe "&svdFreeSMat" p_freeSMat :: FunPtr (Ptr SparseMatrix -> IO ())
foreign import ccall unsafe "svdTransposeS" _transposeSMat :: Ptr SparseMatrix -> IO (Ptr SparseMatrix)
foreign import ccall unsafe "svdConvertDtoS" _convertDToS :: Ptr DenseMatrix -> IO (Ptr SparseMatrix)
foreign import ccall unsafe "svdConvertStoD" _convertSToD :: Ptr SparseMatrix -> IO (Ptr DenseMatrix)
newtype SVDRec = SVDRec (ForeignPtr SVDRec)
foreign import ccall unsafe "svdLAS2A" _svdLAS2 :: Ptr SparseMatrix -> CLong -> IO (Ptr SVDRec)
foreign import ccall unsafe "get_svdrec_ut" getUt :: Ptr SVDRec -> IO (Ptr DenseMatrix)
foreign import ccall unsafe "get_svdrec_s" getS :: Ptr SVDRec -> IO (Ptr Double)
foreign import ccall unsafe "get_svdrec_vt" getVt :: Ptr SVDRec -> IO (Ptr DenseMatrix)
foreign import ccall unsafe "get_svdrec_rank" getRank :: Ptr SVDRec -> IO CLong
foreign import ccall unsafe "get_dmat_rows" getRows :: Ptr DenseMatrix -> IO CLong
foreign import ccall unsafe "get_dmat_cols" getCols :: Ptr DenseMatrix -> IO CLong
foreign import ccall unsafe "get_dmat_buffer" getBuffer :: Ptr DenseMatrix -> IO (Ptr Double)
foreign import ccall unsafe "get_smat_rows" getSRows :: Ptr SparseMatrix -> IO CLong
foreign import ccall unsafe "get_smat_cols" getSCols :: Ptr SparseMatrix -> IO CLong
foreign import ccall unsafe "get_smat_pointr" getSPointr :: Ptr SparseMatrix -> IO (Ptr CLong)
foreign import ccall unsafe "get_smat_rowind" getSRowind :: Ptr SparseMatrix -> IO (Ptr CLong) --long?
foreign import ccall unsafe "get_smat_buffer" getSBuffer :: Ptr SparseMatrix -> IO (Ptr Double)
foreign import ccall unsafe "set_verbosity" setVerbosity :: CLong -> IO ()
asDMat :: Ptr DenseMatrix -> IO DenseMatrix
asDMat ptr = DMat <$> newForeignPtr p_freeDMat ptr
asSMat :: Ptr SparseMatrix -> IO SparseMatrix
asSMat ptr = SMat <$> newForeignPtr p_freeSMat ptr
wrapSMatrix :: I.CSR -> IO SparseMatrix
wrapSMatrix csr = do
let tfst (x,_,_) = x
Vec.unsafeWith (Vec.map fromIntegral $ I.csrRows csr) $ \rowvec ->
Vec.unsafeWith (Vec.map fromIntegral $ I.csrCols csr) $ \colvec ->
Vec.unsafeWith (I.csrVals csr) $ \valvec -> do
smatptr <- _newSMatFromCSRT
(fromIntegral $ I.csrNRows csr)
(fromIntegral $ I.csrNCols csr)
(fromIntegral $ P.size $ I.csrVals csr)
rowvec
colvec
valvec
asSMat smatptr
transposeSMatrix :: SparseMatrix -> IO SparseMatrix
transposeSMatrix (SMat fptr) = withForeignPtr fptr $ \ptr->
_transposeSMat ptr >>= asSMat
matrixToDMatrix :: P.Matrix Double -> IO DenseMatrix
matrixToDMatrix m = do
let m' = P.flatten m
(fptr, offset, length) = I.unsafeToForeignPtr m'
dmat <- withForeignPtr fptr $ _newDMatFromArray (fromIntegral $ P.rows m) (fromIntegral $ P.cols m)
asDMat dmat
dMatrixToMatrix :: DenseMatrix -> IO (P.Matrix Double)
dMatrixToMatrix (DMat fptr) = withForeignPtr fptr $ \ptr->do
rows <- fromIntegral <$> getRows ptr
cols <- fromIntegral <$> getCols ptr
value <- getBuffer ptr >>= newForeignPtr_
return $ I.matrixFromVector I.RowMajor rows cols
$ I.unsafeFromForeignPtr value 0 (rows*cols)
dMatrixToSMatrix :: DenseMatrix -> IO SparseMatrix
dMatrixToSMatrix (DMat fptr) = withForeignPtr fptr $ \ptr->
_convertDToS ptr >>= asSMat
sMatrixToDMatrix :: SparseMatrix -> IO DenseMatrix
sMatrixToDMatrix (SMat fptr) = withForeignPtr fptr $ \ptr->
_convertSToD ptr >>= asDMat
runSvd :: Int -> SparseMatrix -> IO SVDRec
runSvd rank (SMat fptr) = withForeignPtr fptr $ \ptr->do
res <- _svdLAS2 ptr (fromIntegral rank)
SVDRec <$> newForeignPtr finalizerFree res
unpackSvdRec :: SVDRec -> IO (P.Matrix Double, P.Vector Double, P.Matrix Double)
unpackSvdRec (SVDRec fptr) = withForeignPtr fptr $ \ptr->do
rank <- fromIntegral <$> getRank ptr
ut <- getUt ptr >>= asDMat >>= dMatrixToMatrix
ptrS <- getS ptr >>= newForeignPtr finalizerFree
let s = I.unsafeFromForeignPtr ptrS 0 rank
vt <- getVt ptr >>= asDMat >>= dMatrixToMatrix
return (ut, s, vt)
svd :: Int -> P.Matrix Double -> (P.Matrix Double, P.Vector Double, P.Matrix Double)
svd rank m = unsafePerformIO $ do
setVerbosity 0
>> matrixToDMatrix m
>>= dMatrixToSMatrix
>>= runSvd rank
>>= unpackSvdRec
sparsify :: P.Matrix Double -> I.CSR
sparsify mat = I.CSR {
I.csrVals = P.flatten mat,
I.csrCols = Vec.iterateN (rows*cols) (\x -> (x `mod` i32cols) + 1) 1,
I.csrRows = Vec.iterateN (rows+1) (+i32cols) 1,
I.csrNRows = rows,
I.csrNCols = cols
} where
(rows, cols) = P.size mat
(i32rows, i32cols) = (fromIntegral rows, fromIntegral cols)
shiftCSR :: I.CSR -> I.CSR
shiftCSR csr = csr {
I.csrRows = Vec.map (subtract 1) $ I.csrRows csr,
I.csrCols = Vec.map (subtract 1) $ I.csrCols csr
}
sparseSvd :: Int -> I.CSR -> (P.Matrix Double, P.Vector Double, P.Matrix Double)
sparseSvd rank m = unsafePerformIO $
setVerbosity 0
>> (wrapSMatrix $ shiftCSR m)
>>= runSvd rank
>>= unpackSvdRec