Data.SAM.Version1_6.Read.Base

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Reading

readSAM_V1_6

Arguments

:: FilePath

Path to SAM file.

-> IO SAM_V1_6

Read a SAM_V1_6 from a file. The file is checked for errors as it parses the SAM file. See the SAM v1.6 specification documentation.