xsact: Cluster EST sequences
Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:
xsact; implements a complete multiple-matching clustering algorithm.
xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.
xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.
Downloads
- xsact-1.7.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
Versions [RSS] | 1.6, 1.7.2, 1.7.3 |
---|---|
Dependencies | array, base (>3 && <4.2), containers, directory, process, random, unix [details] |
Tested with | ghc ==6.10.4 |
License | LicenseRef-GPL |
Author | Ketil Malde |
Maintainer | Ketil Malde <ketil@malde.org> |
Category | Bioinformatics |
Home page | http://malde.org/~ketil/ |
Uploaded | by KetilMalde at 2010-09-09T20:31:18Z |
Distributions | |
Reverse Dependencies | 1 direct, 0 indirect [details] |
Executables | xtract, xplit, xsact |
Downloads | 2545 total (1 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs not available [build log] All reported builds failed as of 2016-12-29 [all 7 reports] |