The Rfam.fasta.gz file provides useful information: (1) conversion between Rfam accession and Rfam identifier, (2) species accession, (3) name of said species, and (4) the sequence fasta file.
- data RfamFasta = RfamFasta {}
- type ModelAC2ID = Map ModelAccession ModelIdentification
- type ModelID2AC = Map ModelIdentification ModelAccession
- type ACAC2RfamFasta = Map ModelAccession (Map EmblAccession RfamFasta)
- type IDAC2RfamFasta = Map ModelIdentification (Map EmblAccession RfamFasta)
Documentation
Rfam FASTA entry.
RfamFasta | |
|
Some in-memory lookup systems.
type ModelAC2ID = Map ModelAccession ModelIdentificationSource
Model accession to model identifier
type ModelID2AC = Map ModelIdentification ModelAccessionSource
Model identifier to model accession
type ACAC2RfamFasta = Map ModelAccession (Map EmblAccession RfamFasta)Source
Model accession and sequence accession to RfamFasta
entry (and model
accession to all entries for this accession).
type IDAC2RfamFasta = Map ModelIdentification (Map EmblAccession RfamFasta)Source
Model identifier and sequence accession to RfamFasta
entry.