bio-0.4: A bioinformatics library
Source code
Contents
Index
Bio.GFF3.Feature
Documentation
data
GFFAttr
Source
Constructors
GFFAttr
attrTag
:: !
ByteString
attrValues
:: ![
ByteString
]
Instances
Eq
GFFAttr
Ord
GFFAttr
Show
GFFAttr
data
Feature
Source
Constructors
Feature
seqid
:: !
ByteString
source
:: !
ByteString
ftype
:: !
ByteString
start
:: !
Offset
end
:: !
Offset
score
:: !(
Maybe
Double
)
strand
:: !(
Maybe
Strand
)
phase
:: !(
Maybe
Offset
)
attributes
:: ![
GFFAttr
]
Instances
Eq
Feature
Ord
Feature
Show
Feature
length
::
Feature
->
Offset
Source
parse
:: (
Error
e,
MonadError
e m) =>
ByteString
-> m
Feature
Source
unparse
::
Feature
->
ByteString
Source
parseWithFasta
:: (
Error
e,
MonadError
e m) =>
ByteString
-> m ([
Feature
], [
ByteString
])
Source
attrByTag
::
ByteString
->
Feature
-> [
ByteString
]
Source
ids
::
Feature
-> [
ByteString
]
Source
parentIds
::
Feature
-> [
ByteString
]
Source
contigLoc
::
Feature
->
ContigLoc
Source
loc
::
Feature
->
Loc
Source
seqLoc
::
Feature
->
SeqLoc
Source
name
:: (
Error
e,
MonadError
e m) =>
Feature
-> m
SeqName
Source
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version 2.4.2