Contents
Index
seqloc-0.6.1: Handle sequence locations for bioinformatics
Index
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Bio.SeqLoc.ShiftedVector
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Bio.SeqLoc.ShiftedVector
acceptor
Bio.SeqLoc.Transcript
allPos
Bio.SeqLoc.Location
andSameSeq
Bio.SeqLoc.OnSeq
atPos
Bio.SeqLoc.Position
bounds
Bio.SeqLoc.Location
cds
Bio.SeqLoc.Transcript
cdsLocation
Bio.SeqLoc.Transcript
clocInto
Bio.SeqLoc.Location
clocOutof
Bio.SeqLoc.Location
compl
Bio.SeqLoc.Strand
concat
Bio.SeqLoc.SeqLike
ContigLoc
Bio.SeqLoc.Location
contigOverlaps
Bio.SeqLoc.Location
ContigSeqLoc
Bio.SeqLoc.OnSeq
contigSpan
Bio.SeqLoc.SpliceLocation
donor
Bio.SeqLoc.Transcript
empty
Bio.SeqLoc.ShiftedVector
emptyLM
Bio.SeqLoc.LocMap
emptySLM
Bio.SeqLoc.LocMap
emptyZ
Bio.SeqLoc.ShiftedVector
end
Bio.SeqLoc.ShiftedVector
endPos
Bio.SeqLoc.Location
ensureHigh
Bio.SeqLoc.ShiftedVector
ensureLow
Bio.SeqLoc.ShiftedVector
extend
Bio.SeqLoc.Location
fromBoundsStrand
Bio.SeqLoc.Location
fromContigs
Bio.SeqLoc.SpliceLocation
fromDonorAcceptor
Bio.SeqLoc.Transcript
fromPosLen
Bio.SeqLoc.Location
fromStartEnd
Bio.SeqLoc.Location
geneId
Bio.SeqLoc.Transcript
insertLoc
Bio.SeqLoc.LocMap
insertSeqLoc
Bio.SeqLoc.LocMap
intron
Bio.SeqLoc.Transcript
Junction
1 (Type/Class)
Bio.SeqLoc.Transcript
2 (Data Constructor)
Bio.SeqLoc.Transcript
junctions
Bio.SeqLoc.Transcript
length
1 (Function)
Bio.SeqLoc.ShiftedVector
2 (Function)
Bio.SeqLoc.SeqLike
3 (Function)
Bio.SeqLoc.Location
Locatable
Bio.SeqLoc.LocMap
locatableSeqLocMap
Bio.SeqLoc.LocMap
locate
Bio.SeqLoc.LocMap
Location
Bio.SeqLoc.Location
location
Bio.SeqLoc.Transcript
locInto
Bio.SeqLoc.SpliceLocation
LocMap
Bio.SeqLoc.LocMap
locOutof
Bio.SeqLoc.SpliceLocation
LocRepr
Bio.SeqLoc.LocRepr
mergeAdjContigs
Bio.SeqLoc.SpliceLocation
mergeContigs
Bio.SeqLoc.SpliceLocation
Minus
Bio.SeqLoc.Strand
modifySome
Bio.SeqLoc.ShiftedVector
ntAt
Bio.SeqLoc.SeqLike
null
Bio.SeqLoc.ShiftedVector
nullis
Bio.SeqLoc.ShiftedVector
Offset
1 (Data Constructor)
Bio.SeqLoc.Position
2 (Type/Class)
Bio.SeqLoc.Position
offset
Bio.SeqLoc.Position
offset5
Bio.SeqLoc.Location
offsetWithin
Bio.SeqLoc.Location
OnSeq
1 (Type/Class)
Bio.SeqLoc.OnSeq
2 (Data Constructor)
Bio.SeqLoc.OnSeq
onSeqLabel
Bio.SeqLoc.OnSeq
overlaps
Bio.SeqLoc.Location
Plus
Bio.SeqLoc.Strand
Pos
1 (Type/Class)
Bio.SeqLoc.Position
2 (Data Constructor)
Bio.SeqLoc.Position
posInto
Bio.SeqLoc.Location
posOutof
Bio.SeqLoc.Location
posWithin
Bio.SeqLoc.Location
queryLoc
Bio.SeqLoc.LocMap
queryLocatable
Bio.SeqLoc.LocMap
queryLocCompatible
Bio.SeqLoc.LocMap
querySeqLoc
Bio.SeqLoc.LocMap
replicate
Bio.SeqLoc.ShiftedVector
repr
Bio.SeqLoc.LocRepr
reprStr
Bio.SeqLoc.LocRepr
revCompl
Bio.SeqLoc.Strand
seqData
Bio.SeqLoc.Location
seqDataPad
Bio.SeqLoc.Location
SeqLabel
1 (Data Constructor)
Bio.SeqLoc.OnSeq
2 (Type/Class)
Bio.SeqLoc.OnSeq
SeqLike
Bio.SeqLoc.SeqLike
SeqLocMap
Bio.SeqLoc.LocMap
SeqOffset
Bio.SeqLoc.OnSeq
SeqPos
Bio.SeqLoc.OnSeq
ShiftedVector
1 (Type/Class)
Bio.SeqLoc.ShiftedVector
2 (Data Constructor)
Bio.SeqLoc.ShiftedVector
singleton
1 (Function)
Bio.SeqLoc.ShiftedVector
2 (Function)
Bio.SeqLoc.SpliceLocation
slide
1 (Function)
Bio.SeqLoc.Position
2 (Function)
Bio.SeqLoc.Location
sortContigs
Bio.SeqLoc.Transcript
SpliceLoc
Bio.SeqLoc.SpliceLocation
SpliceSeqLoc
Bio.SeqLoc.OnSeq
start
Bio.SeqLoc.ShiftedVector
startPos
Bio.SeqLoc.Location
Strand
Bio.SeqLoc.Strand
strand
1 (Function)
Bio.SeqLoc.Position
2 (Function)
Bio.SeqLoc.Location
Stranded
Bio.SeqLoc.Strand
stranded
Bio.SeqLoc.Strand
subseq
Bio.SeqLoc.SeqLike
subseqPad
Bio.SeqLoc.SeqLike
toContigs
Bio.SeqLoc.Location
toSeqLabel
Bio.SeqLoc.OnSeq
Transcript
1 (Type/Class)
Bio.SeqLoc.Transcript
2 (Data Constructor)
Bio.SeqLoc.Transcript
transcriptSeqLocMap
Bio.SeqLoc.LocMap
trxId
Bio.SeqLoc.Transcript
unOff
Bio.SeqLoc.Position
unOnSeq
Bio.SeqLoc.OnSeq
unrepr
Bio.SeqLoc.LocRepr
unreprEither
Bio.SeqLoc.LocRepr
unreprErr
Bio.SeqLoc.LocRepr
unreprMaybe
Bio.SeqLoc.LocRepr
unSeqLabel
Bio.SeqLoc.OnSeq
unSL
Bio.SeqLoc.OnSeq
utr3
Bio.SeqLoc.Transcript
utr5
Bio.SeqLoc.Transcript
vector
Bio.SeqLoc.ShiftedVector
withLocate
Bio.SeqLoc.LocMap
WithLocation
1 (Type/Class)
Bio.SeqLoc.LocMap
2 (Data Constructor)
Bio.SeqLoc.LocMap
withoutLocation
Bio.SeqLoc.LocMap
zerois
Bio.SeqLoc.ShiftedVector