BiobaseBlast: BLAST-related tools
This library contains BLAST-related functionality:
Parser for tabular NCBI BLAST+ output
Parser for JSON2 NCBI BLAST+ output
Parsers for BLOSUM and PAM matrices.
Specialized substitution functions for (in)complete amino acid / nucleotide triplet substitution.
Incomplete nucleotide patterns map one or two nucleotides to an amino acid (need for indel editing in the mitochondria of certain species like p.polycephalum).
The matrices are currently not provided but can be found here: ftp://ftp.ncbi.nih.gov/blast/matrices/
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- BiobaseBlast-0.3.3.0.tar.gz [browse] (Cabal source package)
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Versions [RSS] | 0.0.0.1, 0.2.0.0, 0.2.1.0, 0.3.0.0, 0.3.1.0, 0.3.3.0 |
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Change log | changelog.md |
Dependencies | aeson (>=1.0), attoparsec (>=0.13), base (>=4.7 && <5.0), binary (>=0.7), BiobaseENA (>=0.0.0 && <0.0.1), BiobaseTypes (>=0.2.1 && <0.2.2), BiobaseXNA (>=0.11.1 && <0.11.2), bytestring, cereal (>=0.4), containers, deepseq (>=1.3), directory, file-embed (>=0.0.10), lens (>=4.0), log-domain (>=0.12), mtl (>=2.0), PrimitiveArray (>=0.10.1 && <0.10.2), SciBaseTypes (>=0.1.1 && <0.1.2), text, unordered-containers, vector (>=0.11), vector-th-unbox (>=0.2) [details] |
Tested with | ghc ==8.8, ghc ==8.10, ghc ==9.0 |
License | GPL-3.0-only |
Copyright | Christian Hoener zu Siederdissen, 2013 - 2019 |
Author | Christian Hoener zu Siederdissen, Florian Eggenhofer |
Maintainer | choener@bioinf.uni-leipzig.de |
Category | Bioinformatics |
Home page | https://github.com/choener/BiobaseBlast |
Bug tracker | https://github.com/choener/BiobaseBlast/issues |
Source repo | head: git clone https://github.com/choener/BiobaseBlast this: git clone https://github.com/choener/BiobaseBlast/tree/0.3.1.0(tag 0.3.1.0) |
Uploaded | by FlorianEggenhofer at 2021-06-05T21:06:10Z |
Distributions | |
Reverse Dependencies | 4 direct, 0 indirect [details] |
Downloads | 4306 total (7 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
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Status | Docs available [build log] Last success reported on 2021-06-05 [all 1 reports] |