BlastHTTP: Libary to interface with the NCBI blast REST interface
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and returns a blast result in xml format as BlastResult datatype.
For more information on BLAST refer to: http://blast.ncbi.nlm.nih.gov/Blast.cgi.
Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/BLAST/developer.shtml.
If you plan to submit more than 20 searches in one session, please look up the Usage Guidelines in the webservice information.
[Skip to Readme]
Downloads
- BlastHTTP-1.4.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
Versions [RSS] | 0.0.1, 1.0.0, 1.0.1, 1.2.0, 1.2.1, 1.3.0, 1.4.0, 1.4.1, 1.4.2 |
---|---|
Change log | ChangeLog.md |
Dependencies | base (>=4.5 && <5), BiobaseBlast (>=0.3.3 && <0.3.4), BiobaseFasta (>=0.4.0 && <0.4.1), bytestring, conduit, either-unwrap, HTTP, http-conduit, hxt, mtl, network (==2.8.0.0), transformers, zip-archive [details] |
Tested with | ghc ==8.8, ghc ==8.10, ghc ==9.0 |
License | GPL-3.0-only |
Copyright | Florian Eggenhofer |
Author | Florian Eggenhofer, Christian Hoener zu Siederdissen |
Maintainer | egg@informatik.uni-freiburg.de |
Category | Bioinformatics |
Home page | https://github.com/eggzilla/BlastHTTP |
Source repo | head: git clone https://github.com/eggzilla/BlastHTTP this: git clone https://github.com/eggzilla/BlastHTTP/tree/1.4.2(tag 1.4.2) |
Uploaded | by FlorianEggenhofer at 2021-06-05T21:19:54Z |
Distributions | |
Reverse Dependencies | 2 direct, 0 indirect [details] |
Downloads | 7677 total (10 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs available [build log] Last success reported on 2021-06-05 [all 1 reports] |