Genbank: Libary for processing the NCBI genbank format

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Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

Bio.GenbankData - Datastructures for Genbank format

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

Bio.GenbankParser - Parse Genbank format

Contains Haskell functions to parse Genbank format from files or internal Strings.

Bio.GenbankTools - Tools for processing Genbank

Contains Haskell functions to extract nucleotide sequences for features

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Genbank-1.0.3.tar.gz [browse] (Cabal source package)
Package description (as included in the package)

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FlorianEggenhofer

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Candidates

1.0.0, 1.0.1, 1.0.2, 1.0.3

Versions [RSS]	1.0.0, 1.0.1, 1.0.2, 1.0.3
Dependencies	base (>=4.5 && <5), biocore, biofasta, bytestring, cmdargs, Genbank, parsec, split [details]
License	LicenseRef-GPL
Author	Florian Eggenhofer
Maintainer	egg@tbi.univie.ac.at
Category	Bioinformatics
Source repo	head: git clone https://github.com/eggzilla/Genbank this: git clone https://github.com/eggzilla/Genbank/tree/1.0.3(tag 1.0.3)
Uploaded	by FlorianEggenhofer at 2014-10-26T13:29:26Z
Distributions
Reverse Dependencies	1 direct, 0 indirect [details]
Executables	GenbankTest
Downloads	4375 total (10 in the last 30 days)
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Status	Docs uploaded by user Build status unknown [no reports yet]

Readme for Genbank-1.0.3

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#Genbank

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to:

http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see:

http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features