| Safe Haskell | Safe |
|---|---|
| Language | Haskell98 |
Bio.RNAupData
Description
This module contains a data structure for RNAup output For more information on RNAup consult: http://www.tbi.univie.ac.at/RNA/RNAup.html
- data RNAupInteraction = RNAupInteraction {}
- data RNAupInteractionRegion = RNAupInteractionRegion {
- upSecondaryStructure :: String
- upQueryDuplexBegin :: Int
- upQueryDuplexEnd :: Int
- upTargetDuplexBegin :: Int
- upTargetDuplexEnd :: Int
- upDuplexEnergy :: Double
- upDuplexEnergyWithoutAccessiblity :: Maybe Double
- upQueryAccessiblity :: Maybe Double
- upTargetAccessibility :: Maybe Double
- upQuerySequence :: String
- upTargetSequence :: String
- upOutputFileName :: Maybe String
Documentation
data RNAupInteraction Source
Data structure for individual interaction between a target and query nucleic acid seqence, contains all (sub)-optimal interactions
Constructors
| RNAupInteraction | |
Fields | |
Instances
data RNAupInteractionRegion Source
Data structure for (sub-) optimal interaction region
Constructors