packSeqid | Bio.Base, Bio.TwoBit |
Pad | Bio.Bam.Rec, Bio.Bam |
parMapChunksIO | Bio.Iteratee, Bio.Iteratee.Bgzf, Bio.Bam |
parseBamMeta | Bio.Bam.Header, Bio.Bam |
parseBamMetaLine | Bio.Bam.Header, Bio.Bam |
ParseError | |
1 (Type/Class) | Bio.Iteratee, Bio.Bam |
2 (Data Constructor) | Bio.Iteratee, Bio.Bam |
parseFastq | Bio.Bam.Fastq, Bio.Bam |
parseFastq' | Bio.Bam.Fastq, Bio.Bam |
parseFastqCassava | Bio.Bam.Fastq, Bio.Bam |
parserToIteratee | Bio.Iteratee, Bio.Bam |
partitionPairEithers | Bio.Bam.Pileup |
peek | Bio.Bam.Pileup |
peekMinPQ | Bio.PriorityQueue |
peekStream | Bio.Iteratee, Bio.Bam |
phredconverse | Bio.Util |
phredminus | Bio.Util |
phredplus | Bio.Util |
phredsum | Bio.Util |
Pile | |
1 (Type/Class) | Bio.Bam.Pileup |
2 (Data Constructor) | Bio.Bam.Pileup |
Pile' | Bio.Bam.Pileup |
PileF | Bio.Bam.Pileup |
PileM | |
1 (Type/Class) | Bio.Bam.Pileup |
2 (Data Constructor) | Bio.Bam.Pileup |
pileup | Bio.Bam.Pileup |
pileup' | Bio.Bam.Pileup |
pileup'' | Bio.Bam.Pileup |
pipeBamOutput | Bio.Bam.Writer, Bio.Bam |
pipeSamOutput | Bio.Bam.Writer, Bio.Bam |
popQ | Bio.Iteratee, Bio.Bam |
Pos | Bio.Base, Bio.TwoBit |
Position | Bio.Base, Bio.TwoBit |
pow | Bio.Base, Bio.TwoBit |
PQ | Bio.PriorityQueue |
PQ_Conf | |
1 (Type/Class) | Bio.PriorityQueue |
2 (Data Constructor) | Bio.PriorityQueue |
Pr | Bio.Base, Bio.TwoBit |
PrimBase | Bio.Bam.Pileup |
PrimChunks | Bio.Bam.Pileup |
printLines | Bio.Iteratee, Bio.Bam |
printLinesUnterminated | Bio.Iteratee, Bio.Bam |
Prob | Bio.Base, Bio.TwoBit |
probToQual | Bio.Base, Bio.TwoBit |
progressNum | Bio.Iteratee, Bio.Bam |
progressPos | Bio.Bam.Rec, Bio.Bam |
properBases | Bio.Base, Bio.TwoBit |
protectTerm | Bio.Iteratee, Bio.Bam |
Push | |
1 (Type/Class) | Bio.Iteratee.Builder |
2 (Data Constructor) | Bio.Iteratee.Builder |
pushBam | Bio.Bam.Writer, Bio.Bam |
pushBuilder | Bio.Iteratee.Builder |
pushByte | Bio.Iteratee.Builder |
pushByteString | Bio.Iteratee.Builder |
pushQ | Bio.Iteratee, Bio.Bam |
pushWord16 | Bio.Iteratee.Builder |
pushWord32 | Bio.Iteratee.Builder |
p_indel_pile | Bio.Bam.Pileup |
p_indel_stat | Bio.Bam.Pileup |
p_is_reverse | Bio.Base, Bio.TwoBit |
p_pos | Bio.Bam.Pileup |
p_refseq | Bio.Bam.Pileup |
p_seq | Bio.Base, Bio.TwoBit |
p_snp_pile | Bio.Bam.Pileup |
p_snp_stat | Bio.Bam.Pileup |
p_start | Bio.Base, Bio.TwoBit |