ELynx.Tree.Distribution.BirthDeath

Creation date: Tue Feb 13 13:16:18 2018.

See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005.

Distribution of the values of the point process such that it corresponds to reconstructed trees under the birth and death process.

Documentation

data BirthDeathDistribution

Distribution of the values of the point process such that it corresponds to a reconstructed tree of the birth and death process.

Constructors

BDD

Fields

• bddTOr :: Time

  Time to origin of the tree.

• bddLa :: Rate

  Birth rate.

• bddMu :: Rate

  Death rate.

Instances

Eq BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

Methods

(==) :: BirthDeathDistribution -> BirthDeathDistribution -> Bool

(/=) :: BirthDeathDistribution -> BirthDeathDistribution -> Bool

Data BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BirthDeathDistribution -> c BirthDeathDistribution

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BirthDeathDistribution

toConstr :: BirthDeathDistribution -> Constr

dataTypeOf :: BirthDeathDistribution -> DataType

dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c BirthDeathDistribution)

dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BirthDeathDistribution)

gmapT :: (forall b. Data b => b -> b) -> BirthDeathDistribution -> BirthDeathDistribution

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathDistribution -> r

gmapQr :: forall r r'. (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathDistribution -> r

gmapQ :: (forall d. Data d => d -> u) -> BirthDeathDistribution -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> BirthDeathDistribution -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution

Generic BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

Associated Types

type Rep BirthDeathDistribution :: Type -> Type

Methods

from :: BirthDeathDistribution -> Rep BirthDeathDistribution x

to :: Rep BirthDeathDistribution x -> BirthDeathDistribution

Distribution BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

Methods

cumulative :: BirthDeathDistribution -> Double -> Double

complCumulative :: BirthDeathDistribution -> Double -> Double

ContDistr BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

Methods

density :: BirthDeathDistribution -> Double -> Double

quantile :: BirthDeathDistribution -> Double -> Double

complQuantile :: BirthDeathDistribution -> Double -> Double

logDensity :: BirthDeathDistribution -> Double -> Double

ContGen BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

Methods

genContVar :: PrimMonad m => BirthDeathDistribution -> Gen (PrimState m) -> m Double

type Rep BirthDeathDistribution

Defined in ELynx.Tree.Distribution.BirthDeath

type Rep BirthDeathDistribution = D1 ('MetaData "BirthDeathDistribution" "ELynx.Tree.Distribution.BirthDeath" "elynx-tree-0.6.0.0-FQkEU9t6m33732ommPyIXg" 'False) (C1 ('MetaCons "BDD" 'PrefixI 'True) (S1 ('MetaSel ('Just "bddTOr") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Time) :*: (S1 ('MetaSel ('Just "bddLa") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate) :*: S1 ('MetaSel ('Just "bddMu") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate))))

cumulative :: BirthDeathDistribution -> Time -> Double

Cumulative distribution function Eq. (3).

density :: BirthDeathDistribution -> Time -> Double

Density function Eq. (2).

quantile :: BirthDeathDistribution -> Double -> Time

Inverted cumulative probability distribution cumulative. See also ContDistr.