ELynx.Tree.Distribution.BirthDeathCritical

Creation date: Tue Feb 13 13:16:18 2018.

See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005.

Distribution of the values of the point process such that it corresponds to reconstructed trees under the birth and death process; critical birth and death process with lambda=mu.

Documentation

data BirthDeathCriticalDistribution

Distribution of the values of the point process such that it corresponds to a reconstructed tree of the birth and death process.

Constructors

BDCD

Fields

• bdcdTOr :: Time

  Time to origin of the tree.

• bdcdLa :: Rate

  Birth and death rate.

Instances

Eq BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

Methods

(==) :: BirthDeathCriticalDistribution -> BirthDeathCriticalDistribution -> Bool

(/=) :: BirthDeathCriticalDistribution -> BirthDeathCriticalDistribution -> Bool

Data BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BirthDeathCriticalDistribution -> c BirthDeathCriticalDistribution

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BirthDeathCriticalDistribution

toConstr :: BirthDeathCriticalDistribution -> Constr

dataTypeOf :: BirthDeathCriticalDistribution -> DataType

dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c BirthDeathCriticalDistribution)

dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BirthDeathCriticalDistribution)

gmapT :: (forall b. Data b => b -> b) -> BirthDeathCriticalDistribution -> BirthDeathCriticalDistribution

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathCriticalDistribution -> r

gmapQr :: forall r r'. (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathCriticalDistribution -> r

gmapQ :: (forall d. Data d => d -> u) -> BirthDeathCriticalDistribution -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> BirthDeathCriticalDistribution -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> BirthDeathCriticalDistribution -> m BirthDeathCriticalDistribution

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathCriticalDistribution -> m BirthDeathCriticalDistribution

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathCriticalDistribution -> m BirthDeathCriticalDistribution

Generic BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

Associated Types

type Rep BirthDeathCriticalDistribution :: Type -> Type

Methods

from :: BirthDeathCriticalDistribution -> Rep BirthDeathCriticalDistribution x

to :: Rep BirthDeathCriticalDistribution x -> BirthDeathCriticalDistribution

Distribution BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

Methods

cumulative :: BirthDeathCriticalDistribution -> Double -> Double

complCumulative :: BirthDeathCriticalDistribution -> Double -> Double

ContDistr BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

Methods

density :: BirthDeathCriticalDistribution -> Double -> Double

quantile :: BirthDeathCriticalDistribution -> Double -> Double

complQuantile :: BirthDeathCriticalDistribution -> Double -> Double

logDensity :: BirthDeathCriticalDistribution -> Double -> Double

ContGen BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

Methods

genContVar :: PrimMonad m => BirthDeathCriticalDistribution -> Gen (PrimState m) -> m Double

type Rep BirthDeathCriticalDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCritical

type Rep BirthDeathCriticalDistribution = D1 ('MetaData "BirthDeathCriticalDistribution" "ELynx.Tree.Distribution.BirthDeathCritical" "elynx-tree-0.6.0.0-FQkEU9t6m33732ommPyIXg" 'False) (C1 ('MetaCons "BDCD" 'PrefixI 'True) (S1 ('MetaSel ('Just "bdcdTOr") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Time) :*: S1 ('MetaSel ('Just "bdcdLa") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate)))

cumulative :: BirthDeathCriticalDistribution -> Time -> Double

Cumulative distribution function section 2.1.2, second formula.

density :: BirthDeathCriticalDistribution -> Time -> Double

Density function section 2.1.2, first formula.

quantile :: BirthDeathCriticalDistribution -> Double -> Time

Inverted cumulative probability distribution cumulative. See also ContDistr.