ELynx.Tree.Support

Creation date: Thu Jun 13 14:06:45 2019.

Non-negative support value

data Support

Non-negative support value.

However, non-negativity is only checked with toSupport, and negative values can be obtained using the Num and related instances.

See also the documentation of Length.

Instances

Enum Support

Defined in ELynx.Tree.Support

Methods

succ :: Support -> Support

pred :: Support -> Support

toEnum :: Int -> Support

fromEnum :: Support -> Int

enumFrom :: Support -> [Support]

enumFromThen :: Support -> Support -> [Support]

enumFromTo :: Support -> Support -> [Support]

enumFromThenTo :: Support -> Support -> Support -> [Support]

Eq Support

Defined in ELynx.Tree.Support

Methods

(==) :: Support -> Support -> Bool

(/=) :: Support -> Support -> Bool

Floating Support

Defined in ELynx.Tree.Support

Methods

pi :: Support

exp :: Support -> Support

log :: Support -> Support

sqrt :: Support -> Support

(**) :: Support -> Support -> Support

logBase :: Support -> Support -> Support

sin :: Support -> Support

cos :: Support -> Support

tan :: Support -> Support

asin :: Support -> Support

acos :: Support -> Support

atan :: Support -> Support

sinh :: Support -> Support

cosh :: Support -> Support

tanh :: Support -> Support

asinh :: Support -> Support

acosh :: Support -> Support

atanh :: Support -> Support

log1p :: Support -> Support

expm1 :: Support -> Support

log1pexp :: Support -> Support

log1mexp :: Support -> Support

Fractional Support

Defined in ELynx.Tree.Support

Methods

(/) :: Support -> Support -> Support

recip :: Support -> Support

fromRational :: Rational -> Support

Num Support

Defined in ELynx.Tree.Support

Methods

(+) :: Support -> Support -> Support

(-) :: Support -> Support -> Support

(*) :: Support -> Support -> Support

negate :: Support -> Support

abs :: Support -> Support

signum :: Support -> Support

fromInteger :: Integer -> Support

Ord Support

Defined in ELynx.Tree.Support

Methods

compare :: Support -> Support -> Ordering

(<) :: Support -> Support -> Bool

(<=) :: Support -> Support -> Bool

(>) :: Support -> Support -> Bool

(>=) :: Support -> Support -> Bool

max :: Support -> Support -> Support

min :: Support -> Support -> Support

Read Support

Defined in ELynx.Tree.Support

Methods

readsPrec :: Int -> ReadS Support

readList :: ReadS [Support]

readPrec :: ReadPrec Support

readListPrec :: ReadPrec [Support]

Real Support

Defined in ELynx.Tree.Support

Methods

toRational :: Support -> Rational

RealFloat Support

Defined in ELynx.Tree.Support

Methods

floatRadix :: Support -> Integer

floatDigits :: Support -> Int

floatRange :: Support -> (Int, Int)

decodeFloat :: Support -> (Integer, Int)

encodeFloat :: Integer -> Int -> Support

exponent :: Support -> Int

significand :: Support -> Support

scaleFloat :: Int -> Support -> Support

isNaN :: Support -> Bool

isInfinite :: Support -> Bool

isDenormalized :: Support -> Bool

isNegativeZero :: Support -> Bool

isIEEE :: Support -> Bool

atan2 :: Support -> Support -> Support

RealFrac Support

Defined in ELynx.Tree.Support

Methods

properFraction :: Integral b => Support -> (b, Support)

truncate :: Integral b => Support -> b

round :: Integral b => Support -> b

ceiling :: Integral b => Support -> b

floor :: Integral b => Support -> b

Show Support

Defined in ELynx.Tree.Support

Methods

showsPrec :: Int -> Support -> ShowS

show :: Support -> String

showList :: [Support] -> ShowS

Generic Support

Defined in ELynx.Tree.Support

Associated Types

type Rep Support :: Type -> Type

Methods

from :: Support -> Rep Support x

to :: Rep Support x -> Support

Semigroup Support

Defined in ELynx.Tree.Support

Methods

(<>) :: Support -> Support -> Support

sconcat :: NonEmpty Support -> Support

stimes :: Integral b => b -> Support -> Support

NFData Support

Defined in ELynx.Tree.Support

Methods

rnf :: Support -> ()

ToJSON Support

Defined in ELynx.Tree.Support

Methods

toJSON :: Support -> Value

toEncoding :: Support -> Encoding

toJSONList :: [Support] -> Value

toEncodingList :: [Support] -> Encoding

FromJSON Support

Defined in ELynx.Tree.Support

Methods

parseJSON :: Value -> Parser Support

parseJSONList :: Value -> Parser [Support]

Splittable Support

Defined in ELynx.Tree.Support

Methods

split :: Support -> Support

HasMaybeLength Support

Defined in ELynx.Tree.Export.Newick

Methods

getMaybeLength :: Support -> Maybe Length

HasSupport Support

Defined in ELynx.Tree.Support

Methods

getSupport :: Support -> Support

setSupport :: Support -> Support -> Support

modifySupport :: (Support -> Support) -> Support -> Support

HasMaybeSupport Support

Defined in ELynx.Tree.Support

Methods

getMaybeSupport :: Support -> Maybe Support

type Rep Support

Defined in ELynx.Tree.Support

type Rep Support = D1 ('MetaData "Support" "ELynx.Tree.Support" "elynx-tree-0.6.0.0-FQkEU9t6m33732ommPyIXg" 'True) (C1 ('MetaCons "Support" 'PrefixI 'True) (S1 ('MetaSel ('Just "fromSupport") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Double)))

toSupport :: Double -> Either String Support

Return Left if negative.

toSupportUnsafe :: Double -> Support

Do not check if value is negative.

class HasMaybeSupport e where

Class of data types that may have a support value.

Methods

getMaybeSupport :: e -> Maybe Support

Instances

HasMaybeSupport ()

Defined in ELynx.Tree.Support

Methods

getMaybeSupport :: () -> Maybe Support

HasMaybeSupport Length

Defined in ELynx.Tree.Export.Newick

Methods

getMaybeSupport :: Length -> Maybe Support

HasMaybeSupport Support

Defined in ELynx.Tree.Support

Methods

getMaybeSupport :: Support -> Maybe Support

HasMaybeSupport PhyloExplicit

Defined in ELynx.Tree.Phylogeny

Methods

getMaybeSupport :: PhyloExplicit -> Maybe Support

HasMaybeSupport Phylo

Defined in ELynx.Tree.Phylogeny

Methods

getMaybeSupport :: Phylo -> Maybe Support

class HasMaybeSupport e => HasSupport e where

Class of data types with measurable and modifiable support values.

Methods

getSupport :: e -> Support

setSupport :: Support -> e -> e

modifySupport :: (Support -> Support) -> e -> e

Instances

HasSupport Support

Defined in ELynx.Tree.Support

Methods

getSupport :: Support -> Support

setSupport :: Support -> Support -> Support

modifySupport :: (Support -> Support) -> Support -> Support

HasSupport PhyloExplicit

Defined in ELynx.Tree.Phylogeny

Methods

getSupport :: PhyloExplicit -> Support

setSupport :: Support -> PhyloExplicit -> PhyloExplicit

modifySupport :: (Support -> Support) -> PhyloExplicit -> PhyloExplicit

Functions on trees

normalizeBranchSupport :: HasSupport e => Tree e a -> Tree e a

Normalize branch support values. The maximum branch support value will be set to 1.0.

collapse :: (Eq e, Eq a, HasSupport e) => Support -> Tree e a -> Tree e a

Collapse branches with support lower than given value.

The branch and node labels of the collapsed branches are discarded.