Hyrax.Abif.Write

Functionality for writing AB1 files. See generateAb1 for an example of how to create an Ab1

Documentation

createAbifBytes :: Abif -> ByteString

Write an Abif to a ByteString

writeAbif :: FilePath -> Abif -> IO ()

Write an Abif to a file

putAbif :: Abif -> Put

Create the Abif using Data.Binary

putTextStr :: Text -> Put

Write Text

putHeader :: Header -> Put

Write a Header

putDirectory :: Int -> Directory -> Put

Write a Directory

mkHeader :: Header

Create a Header

mkRoot :: Directory

Create the root Directory entry

mkData :: Int -> [Int16] -> Directory

Create a data (DATA) Directory entry and array of ElemShort data

mkComment :: Text -> Directory

Create a comment Directory entry and ElemPString data

mkSampleName :: Text -> Directory

Create a sample name (SMPL) Directory entry and ElemPString data

mkBaseOrder :: Base -> Base -> Base -> Base -> Directory

Create a base order (FWO_) Directory entry data

mkLane :: Int16 -> Directory

Create a lane (LANE) Directory entry and data

mkCalledBases :: Text -> Directory

Create a called bases (PBAS) Directory entry and data

mkMobilityFileName :: Int -> Text -> Directory

Create a mobility file name (PDMF) Directory entry and ElemPString data

mkDyeSignalStrength :: Int16 -> Int16 -> Int16 -> Int16 -> Directory

Create a signal strength (S/N%) Directory entry and data

mkPeakLocations :: [Int16] -> Directory

Create a peak locations (PLOC) Directory entry and array of ElemShort data

addDirectory :: Abif -> Directory -> Abif

Add a directory to an Abif

data Base

Used to specify the base order for the FWO directry entry, see mkBaseOrder

Constructors

BaseA

BaseC

BaseG

BaseT