SLynx.SubSample.Options

Creation date: Sun Oct 7 17:29:45 2018.

Documentation

data SubSampleArguments

Data structure holding the Command line arguments.

Constructors

SubSampleArguments

Fields

• ssAlphabet :: Alphabet
• ssInFile :: FilePath
• ssNSites :: Int
• ssNAlignments :: Int
• ssMbSeed :: SeedOpt

Instances

Eq SubSampleArguments

Defined in SLynx.SubSample.Options

Methods

(==) :: SubSampleArguments -> SubSampleArguments -> Bool

(/=) :: SubSampleArguments -> SubSampleArguments -> Bool

Show SubSampleArguments

Defined in SLynx.SubSample.Options

Methods

showsPrec :: Int -> SubSampleArguments -> ShowS

show :: SubSampleArguments -> String

showList :: [SubSampleArguments] -> ShowS

Generic SubSampleArguments

Defined in SLynx.SubSample.Options

Associated Types

type Rep SubSampleArguments :: Type -> Type

Methods

from :: SubSampleArguments -> Rep SubSampleArguments x

to :: Rep SubSampleArguments x -> SubSampleArguments

ToJSON SubSampleArguments

Defined in SLynx.SubSample.Options

Methods

toJSON :: SubSampleArguments -> Value

toEncoding :: SubSampleArguments -> Encoding

toJSONList :: [SubSampleArguments] -> Value

toEncodingList :: [SubSampleArguments] -> Encoding

FromJSON SubSampleArguments

Defined in SLynx.SubSample.Options

Methods

parseJSON :: Value -> Parser SubSampleArguments

parseJSONList :: Value -> Parser [SubSampleArguments]

Reproducible SubSampleArguments

Defined in SLynx.SubSample.Options

Methods

inFiles :: SubSampleArguments -> [FilePath]

outSuffixes :: SubSampleArguments -> [String]

getSeed :: SubSampleArguments -> Maybe SeedOpt

setSeed :: SubSampleArguments -> SeedOpt -> SubSampleArguments

parser :: Parser SubSampleArguments

cmdName :: String

cmdDsc :: [String]

cmdFtr :: [String]

type Rep SubSampleArguments

Defined in SLynx.SubSample.Options

type Rep SubSampleArguments = D1 ('MetaData "SubSampleArguments" "SLynx.SubSample.Options" "slynx-0.6.0.0-6B9ZaVDZXFjIV5mVem3T4V" 'False) (C1 ('MetaCons "SubSampleArguments" 'PrefixI 'True) ((S1 ('MetaSel ('Just "ssAlphabet") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Alphabet) :*: S1 ('MetaSel ('Just "ssInFile") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 FilePath)) :*: (S1 ('MetaSel ('Just "ssNSites") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Int) :*: (S1 ('MetaSel ('Just "ssNAlignments") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Int) :*: S1 ('MetaSel ('Just "ssMbSeed") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 SeedOpt)))))

subSampleArguments :: Parser SubSampleArguments

Sub command parser.

getOutSuffixes :: Int -> String -> [String]

Get a given number of output file suffixes.

getOutSuffixes 11 "fasta"

Will result in .00.fasta up to .10.fasta.