Data.Datamining.Clustering.SOMInternal

A module containing private SOM internals. Most developers should use SOM instead. This module is subject to change without notice.

Documentation

decayingGaussian :: Floating x => x -> x -> x -> x -> x -> x -> x -> x

A typical learning function for classifiers. decayingGaussian r0 rf w0 wf tf returns a bell curve-shaped function. At time zero, the maximum learning rate (applied to the BMU) is r0, and the neighbourhood width is w0. Over time the bell curve shrinks and the learning rate tapers off, until at time tf, the maximum learning rate (applied to the BMU) is rf, and the neighbourhood width is wf. Normally the parameters should be chosen such that:

• 0 < rf << r0 < 1
• 0 < wf << w0
• 0 < tf

where << means "is much smaller than" (not the Haskell << operator!)

stepFunction :: (Num d, Fractional x, Eq d) => x -> t -> d -> x

A learning function that only updates the BMU and has a constant learning rate.

constantFunction :: x -> t -> d -> x

A learning function that updates all nodes with the same, constant learning rate. This can be useful for testing.

data SOM t d gm x k p

A Self-Organising Map (SOM).

Although SOM implements GridMap, most users will only need the interface provided by Data.Datamining.Clustering.Classifier. If you chose to use the GridMap functions, please note:

1. The functions adjust, and adjustWithKey do not increment the counter. You can do so manually with incrementCounter.
2. The functions map and mapWithKey are not implemented (they just return an error). It would be problematic to implement them because the input SOM and the output SOM would have to have the same Metric type.

Constructors

SOM

Fields

• gridMap :: gm p

  Maps patterns to tiles in a regular grid. In the context of a SOM, the tiles are called "nodes"

• learningRate :: t -> d -> x

  A function which determines the how quickly the SOM learns. For example, if the function is f, then f t d returns the learning rate for a node. The parameter t indicates how many patterns (or pattern batches) have previously been presented to the classifier. Typically this is used to make the learning rate decay over time. The parameter d is the grid distance from the node being updated to the BMU (Best Matching Unit). The output is the learning rate for that node (the amount by which the node's model should be updated to match the target). The learning rate should be between zero and one.

• difference :: p -> p -> x

  A function which compares two patterns and returns a non-negative number representing how different the patterns are. A result of 0 indicates that the patterns are identical.

• makeSimilar :: p -> x -> p -> p

  A function which updates models. If this function is f, then f target amount pattern returns a modified copy of pattern that is more similar to target than pattern is. The magnitude of the adjustment is controlled by the amount parameter, which should be a number between 0 and 1. Larger values for amount permit greater adjustments. If amount=1, the result should be identical to the target. If amount=0, the result should be the unmodified pattern.

• counter :: t

  A counter used as a "time" parameter. If you create the SOM with a counter value 0, and don't directly modify it, then the counter will represent the number of patterns that this SOM has classified.

Instances

(GridMap gm p, k ~ Index (BaseGrid gm p), Grid (gm p), GridMap gm x, k ~ Index (gm p), k ~ Index (BaseGrid gm x), Num t, Ord x, Num x, Num d) => Classifier (SOM t d gm) x k p

Defined in Data.Datamining.Clustering.SOMInternal

Methods

toList :: SOM t d gm x k p -> [(k, p)]

numModels :: SOM t d gm x k p -> Int

models :: SOM t d gm x k p -> [p]

differences :: SOM t d gm x k p -> p -> [(k, x)]

classify :: SOM t d gm x k p -> p -> k

train :: SOM t d gm x k p -> p -> SOM t d gm x k p

trainBatch :: SOM t d gm x k p -> [p] -> SOM t d gm x k p

classifyAndTrain :: SOM t d gm x k p -> p -> (k, SOM t d gm x k p)

diffAndTrain :: SOM t d gm x k p -> p -> ([(k, x)], SOM t d gm x k p)

reportAndTrain :: SOM t d gm x k p -> p -> (k, [(k, x)], SOM t d gm x k p)

Foldable gm => Foldable (SOM t d gm x k)

Defined in Data.Datamining.Clustering.SOMInternal

Methods

fold :: Monoid m => SOM t d gm x k m -> m

foldMap :: Monoid m => (a -> m) -> SOM t d gm x k a -> m

foldr :: (a -> b -> b) -> b -> SOM t d gm x k a -> b

foldr' :: (a -> b -> b) -> b -> SOM t d gm x k a -> b

foldl :: (b -> a -> b) -> b -> SOM t d gm x k a -> b

foldl' :: (b -> a -> b) -> b -> SOM t d gm x k a -> b

foldr1 :: (a -> a -> a) -> SOM t d gm x k a -> a

foldl1 :: (a -> a -> a) -> SOM t d gm x k a -> a

toList :: SOM t d gm x k a -> [a]

null :: SOM t d gm x k a -> Bool

length :: SOM t d gm x k a -> Int

elem :: Eq a => a -> SOM t d gm x k a -> Bool

maximum :: Ord a => SOM t d gm x k a -> a

minimum :: Ord a => SOM t d gm x k a -> a

sum :: Num a => SOM t d gm x k a -> a

product :: Num a => SOM t d gm x k a -> a

(Foldable gm, GridMap gm p, Grid (BaseGrid gm p)) => GridMap (SOM t d gm x k) p

Defined in Data.Datamining.Clustering.SOMInternal

Associated Types

type BaseGrid (SOM t d gm x k) p :: Type

Methods

(!) :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => SOM t d gm x k p -> k0 -> p

toMap :: k0 ~ Index (BaseGrid (SOM t d gm x k) p) => SOM t d gm x k p -> Map k0 p

toGrid :: SOM t d gm x k p -> BaseGrid (SOM t d gm x k) p

toList :: k0 ~ Index (BaseGrid (SOM t d gm x k) p) => SOM t d gm x k p -> [(k0, p)]

lookup :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => k0 -> SOM t d gm x k p -> Maybe p

insert :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => k0 -> p -> SOM t d gm x k p -> SOM t d gm x k p

insertWith :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => (p -> p -> p) -> k0 -> p -> SOM t d gm x k p -> SOM t d gm x k p

insertWithKey :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => (k0 -> p -> p -> p) -> k0 -> p -> SOM t d gm x k p -> SOM t d gm x k p

insertLookupWithKey :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => (k0 -> p -> p -> p) -> k0 -> p -> SOM t d gm x k p -> (Maybe p, SOM t d gm x k p)

delete :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => k0 -> SOM t d gm x k p -> SOM t d gm x k p

adjust :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => (p -> p) -> k0 -> SOM t d gm x k p -> SOM t d gm x k p

adjustWithKey :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => (k0 -> p -> p) -> k0 -> SOM t d gm x k p -> SOM t d gm x k p

alter :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => (Maybe p -> Maybe p) -> k0 -> SOM t d gm x k p -> SOM t d gm x k p

findWithDefault :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => p -> k0 -> SOM t d gm x k p -> p

keys :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), Ord k0) => SOM t d gm x k p -> [k0]

elems :: SOM t d gm x k p -> [p]

map :: (GridMap (SOM t d gm x k) v2, Index (BaseGrid (SOM t d gm x k) p) ~ Index (BaseGrid (SOM t d gm x k) v2)) => (p -> v2) -> SOM t d gm x k p -> SOM t d gm x k v2

mapWithKey :: (k0 ~ Index (BaseGrid (SOM t d gm x k) p), k0 ~ Index (BaseGrid (SOM t d gm x k) v2), GridMap (SOM t d gm x k) v2) => (k0 -> p -> v2) -> SOM t d gm x k p -> SOM t d gm x k v2

filter :: (p -> Bool) -> SOM t d gm x k p -> SOM t d gm x k p

filterWithKey :: k0 ~ Index (BaseGrid (SOM t d gm x k) p) => (k0 -> p -> Bool) -> SOM t d gm x k p -> SOM t d gm x k p

Generic (SOM t d gm x k p)

Defined in Data.Datamining.Clustering.SOMInternal

Associated Types

type Rep (SOM t d gm x k p) :: Type -> Type

Methods

from :: SOM t d gm x k p -> Rep (SOM t d gm x k p) x0

to :: Rep (SOM t d gm x k p) x0 -> SOM t d gm x k p

(NFData t, NFData (gm p)) => NFData (SOM t d gm x k p)

Defined in Data.Datamining.Clustering.SOMInternal

Methods

rnf :: SOM t d gm x k p -> ()

Grid (gm p) => Grid (SOM t d gm x k p)

Defined in Data.Datamining.Clustering.SOMInternal

Associated Types

type Index (SOM t d gm x k p) :: Type

type Direction (SOM t d gm x k p) :: Type

Methods

indices :: SOM t d gm x k p -> [Index (SOM t d gm x k p)]

distance :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> Int

minDistance :: SOM t d gm x k p -> [Index (SOM t d gm x k p)] -> Index (SOM t d gm x k p) -> Int

neighbours :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> [Index (SOM t d gm x k p)]

neighboursOfSet :: SOM t d gm x k p -> [Index (SOM t d gm x k p)] -> [Index (SOM t d gm x k p)]

neighbour :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Direction (SOM t d gm x k p) -> Maybe (Index (SOM t d gm x k p))

numNeighbours :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Int

contains :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Bool

tileCount :: SOM t d gm x k p -> Int

null :: SOM t d gm x k p -> Bool

nonNull :: SOM t d gm x k p -> Bool

edges :: SOM t d gm x k p -> [(Index (SOM t d gm x k p), Index (SOM t d gm x k p))]

viewpoint :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> [(Index (SOM t d gm x k p), Int)]

isAdjacent :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> Bool

adjacentTilesToward :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> [Index (SOM t d gm x k p)]

minimalPaths :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> [[Index (SOM t d gm x k p)]]

directionTo :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> [Direction (SOM t d gm x k p)]

defaultMinDistance :: SOM t d gm x k p -> [Index (SOM t d gm x k p)] -> Index (SOM t d gm x k p) -> Int

defaultNeighbours :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> [Index (SOM t d gm x k p)]

defaultNeighboursOfSet :: SOM t d gm x k p -> [Index (SOM t d gm x k p)] -> [Index (SOM t d gm x k p)]

defaultNeighbour :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Direction (SOM t d gm x k p) -> Maybe (Index (SOM t d gm x k p))

defaultTileCount :: SOM t d gm x k p -> Int

defaultEdges :: SOM t d gm x k p -> [(Index (SOM t d gm x k p), Index (SOM t d gm x k p))]

defaultIsAdjacent :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> Bool

defaultAdjacentTilesToward :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> [Index (SOM t d gm x k p)]

defaultMinimalPaths :: SOM t d gm x k p -> Index (SOM t d gm x k p) -> Index (SOM t d gm x k p) -> [[Index (SOM t d gm x k p)]]

type BaseGrid (SOM t d gm x k) p

Defined in Data.Datamining.Clustering.SOMInternal

type BaseGrid (SOM t d gm x k) p = BaseGrid gm p

type Rep (SOM t d gm x k p)

Defined in Data.Datamining.Clustering.SOMInternal

type Rep (SOM t d gm x k p) = D1 (MetaData "SOM" "Data.Datamining.Clustering.SOMInternal" "som-10.1.8-4U7idyllz4eEJA79g8KqEw" False) (C1 (MetaCons "SOM" PrefixI True) ((S1 (MetaSel (Just "gridMap") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (gm p)) :*: S1 (MetaSel (Just "learningRate") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (t -> d -> x))) :*: (S1 (MetaSel (Just "difference") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (p -> p -> x)) :*: (S1 (MetaSel (Just "makeSimilar") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (p -> x -> p -> p)) :*: S1 (MetaSel (Just "counter") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 t)))))

type Direction (SOM t d gm x k p)

Defined in Data.Datamining.Clustering.SOMInternal

type Direction (SOM t d gm x k p) = Direction (gm p)

type Index (SOM t d gm x k p)

Defined in Data.Datamining.Clustering.SOMInternal

type Index (SOM t d gm x k p) = Index (gm p)

withGridMap :: (gm p -> gm p) -> SOM t d gm x k p -> SOM t d gm x k p

Internal method.

currentLearningFunction :: Num t => SOM t d gm x k p -> d -> x

Returns the learning function currently being used by the SOM.

toGridMap :: GridMap gm p => SOM t d gm x k p -> gm p

Extracts the grid and current models from the SOM. A synonym for gridMap.

adjustNode :: (Grid g, k ~ Index g, Num t) => g -> (t -> x) -> (p -> x -> p -> p) -> p -> k -> k -> p -> p

Internal method.

trainNeighbourhood :: (Grid (gm p), GridMap gm p, Index (BaseGrid gm p) ~ Index (gm p), Num t, Num x, Num d) => SOM t d gm x k p -> Index (gm p) -> p -> SOM t d gm x k p

Trains the specified node and the neighbourood around it to better match a target. Most users should use train, which automatically determines the BMU and trains it and its neighbourhood.

incrementCounter :: Num t => SOM t d gm x k p -> SOM t d gm x k p

Increment the match counter.

justTrain :: (Ord x, Grid (gm p), GridMap gm x, GridMap gm p, Index (BaseGrid gm x) ~ Index (gm p), Index (BaseGrid gm p) ~ Index (gm p), Num t, Num x, Num d) => SOM t d gm x k p -> p -> SOM t d gm x k p

Internal method.