ClustalParser: Libary for parsing Clustal tools output
Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign
Clustal tools are multiple sequence alignment tools for biological sequence like DNA, RNA and Protein. For more information on clustal Tools refer to http://www.clustal.org/.
Mlocarna is a multiple sequence alignment tool for RNA sequences with secondary structure output. For more information on mlocarna refer to http://www.bioinf.uni-freiburg.de/Software/LocARNA/.
Cmalign is a multiple sequence alignment program based on RNA family models and produces ,among others, clustal output. It is part of infernal http://infernal.janelia.org/.
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- ClustalParser-1.3.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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Versions [RSS] | 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.3.0 |
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Change log | ChangeLog.md |
Dependencies | base (>=4.5 && <5), ClustalParser, cmdargs, either-unwrap, parsec (>=3.1.9), text, vector [details] |
Tested with | ghc ==8.4.4, ghc ==8.6.5, ghc ==8.8.1 |
License | GPL-3.0-only |
Author | Florian Eggenhofer |
Maintainer | egg@informatik.uni-freiburg.de |
Category | Bioinformatics |
Source repo | head: git clone https://github.com/eggzilla/ClustalParser this: git clone https://github.com/eggzilla/ClustalParser/tree/1.3.0(tag 1.3.0) |
Uploaded | by FlorianEggenhofer at 2019-11-14T21:55:39Z |
Distributions | LTSHaskell:1.3.0, Stackage:1.3.0 |
Reverse Dependencies | 3 direct, 0 indirect [details] |
Executables | ClustalParserTest |
Downloads | 11535 total (23 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
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Status | Docs available [build log] Last success reported on 2019-11-14 [all 1 reports] |